Description

Join two or more CSV (or TSV) tables by selected fields into a single table

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

csv{:bash}

:file

CSV/TSV formatted files

*.{csv,tsv}

Output

name:type
description
pattern

csv{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

${prefix}.${out_extension}{:bash}

:file

Joined CSV/TSV file

*.{csv,tsv}

versions_csvtk{:bash}

${task.process}{:bash}

:string

The name of the process

csvtk{:bash}

:string

The name of the tool

csvtk version | sed -e "s/csvtk v//g"{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

csvtk{:bash}

:string

The name of the tool

csvtk version | sed -e "s/csvtk v//g"{:bash}

:eval

The expression to obtain the version of the tool

Tools

csvtk
MIT

A cross-platform, efficient, practical CSV/TSV toolkit