Sorts sequences by id/name/sequence/length
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
fastx{:bash}
:file
Input fasta/fastq file
*.{fsa,fas,fa,fasta,fastq,fq,fsa.gz,fas.gz,fa.gz,fasta.gz,fastq.gz,fq.gz}
${prefix}.*{:bash}
Output fasta/fastq file
*.{fasta.gz,fastq.gz}
versions_seqkit{:bash}
${task.process}{:bash}
:string
The name of the process
seqkit{:bash}
The name of the tool
seqkit version | sed 's/^.*v//'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
